Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs34640177 chr2:242548898 T/C 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs34640876 chr14:74380557 G/C 1.16E-5 176 25.4 27.2 10.43 KM Plot
PCPG rs34640906 chr2:242538062 T/G 2.99E-5 176 25.87 27.27 20.28 KM Plot
PCPG rs34653054 chr6:122584552 AT/A 8.92E-8 175 27.3 23.43 15.08 KM Plot
PCPG rs34688121 chr3:136668260 TAA/T 0.000369 173 20.2 27.82 23.03 KM Plot
PCPG rs34689166 chr16:89860697 C/T 0.000166 176 25.87 21.5 36.37 KM Plot
PCPG rs34706544 chr17:50333405 A/G 0.000282 170 26.57 28.3 16.33 KM Plot
PCPG rs34717054 chr2:242547104 G/A 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs34719265 chr16:1726519 CAG/C 0 174 25.6 18.2 2.93 KM Plot
PCPG rs34732569 chr17:50274393 G/A 3.96E-5 176 25.53 28.38 14.43 KM Plot
PCPG rs34740471 chr2:24340273 T/C 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs34745458 chr15:43137201 T/C 2.65E-14 176 25.7 24.7 3.17 KM Plot
PCPG rs34754279 chr3:53099554 C/T 7.69E-6 175 25.08 26.57 11.78 KM Plot
PCPG rs34766979 chr16:71475511 G/A 0.000111 178 24.52 27.22 43.12 KM Plot
PCPG rs34793473 chr14:74435028 G/A 9.42E-6 177 25.28 30.33 7.4 KM Plot